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Selective Bibliography of Dr. Bruce A. Shapiro
CCR Nanobiology Program, NCI

"RNA Nanostructure Design: A New Modality for Nanobiology"
Wednesday, June 11, 2008


1. Martinez HM, Maizel JV, Jr., Shapiro BA
RNA2D3D: A program for Generating, Viewing, and Comparing 3-Dimensional Models of RNA
JOURNAL OF BIOMOLECULAR STRUCTURE AND DYNAMICS 25 (6):669-684 Jun 2008

2. Bindewald E, Hayes R, Yingling YG, Kasprzak W, Shapiro BA
RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
NUCLEIC ACIDS RESEARCH 36 (Database issue):D392-D397 Jan 2008

3. Yingling YG, Shapiro BA
Computational design of an RNA hexagonal nanoring and an RNA nanotube
NANO LETTERS 7 (8):2328-2334 Aug 2007

4. Khaladkar M, Bellofatto V, Wang JT, Tian B, Shapiro BA
RADAR: a web server for RNA data analysis and research
NUCLEIC ACIDS RESEARCH 35 (Web Server issue):W300-W304 Jul 2007

5. Shapiro BA, Yingling YG, Kasprzak W, Bindewald E
Bridging the gap in RNA structure prediction
CURRENT OPINION IN STRUCTURAL BIOLOGY 17 (2):157-165 Apr 2007

6. Yingling YG, Shapiro BA
The impact of dyskeratosis congenita mutations on the structure and dynamics of the human telomerase RNA pseudoknot domain
JOURNAL OF BIOMOLECULAR STRUCTURE AND DYNAMICS 24 (4):303-320 Feb 2007

7. Shapiro BA, Kasprzak W, Grunewald C, Aman J
Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm
JOURNAL OF MOLECULAR GRAPHICS AND MODELLING 25 (4):514-531 Dec 2006

8. Yingling YG, Shapiro BA
The prediction of the wild-type telomerase RNA pseudoknot structure and the pivotal role of the bulge in its formation
JOURNAL OF MOLECULAR GRAPHICS AND MODELLING 25 (2):261-274 Oct 2006

9. Zhang J, Zhang G, Guo R, Shapiro BA, Simon AE
A pseudoknot in a preactive form of a viral RNA is part of a structural switch activating minus-strand synthesis
JOURNAL OF VIROLOGY 80 (18):9181-9191 Sep 2006

10. Linnstaedt SD, Kasprzak WK, Shapiro BA, Casey JL
The role of a metastable RNA secondary structure in hepatitis delta virus genotype III RNA editing
RNA 12 (8):1521-1533 Aug 2006

Created 6/6/08

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